Transcript: lnc-FAM78A-2:1

Basic information

LNCipedia transcript ID: lnc-FAM78A-2:1 
LNCipedia gene ID: lnc-FAM78A-2
Location (hg38): chr9:131347251-131349269
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 281 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016496; NONHSAT135208
Alternative gene names: XLOC_007875; linc-FAM78A-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.9194 non-coding 
CPAT coding probability 11.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM78A-2:1 yes no no no

Available literature

  1. Yang (2015), Genome-wide analysis of long noncoding RNA profile in human gastric epithelial cell response to Helicobacter pylori., Jpn. J. Infect. Dis.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM78A-2:1
3.1 lnc-FAM78A-2:1
4.0 lnc-FAM78A-2:1
4.1 lnc-FAM78A-2:1
5.0 lnc-FAM78A-2:1
5.1 lnc-ABO-28:1
5.2 lnc-FAM78A-2:1