Transcript: lnc-FAM78B-1:1

Basic information

LNCipedia transcript ID: lnc-FAM78B-1:1 
LNCipedia gene ID: lnc-FAM78B-1
Ensembl Gene ID: ENSG00000225325
Ensembl Transcript ID: ENST00000448643
Location (hg38): chr1:166387727-166452632
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 810 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000665; ENST00000448643; ENST00000448643.1; RP11-479J7.1-001; OTTHUMT00000081455.1; NONHSAT007360
Alternative gene names: XLOC_001077; linc-FAM78B-2; ENSG00000225325; RP11-479J7.1; ENSG00000225325.1; OTTHUMG00000033265.1; AL583804.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.9235 non-coding 
CPAT coding probability 5.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM78B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM78B-1:1
3.1 lnc-FAM78B-1:1
4.0 lnc-FAM78B-1:1
4.1 lnc-FAM78B-1:1
5.0 lnc-FAM78B-1:1
5.1 lnc-SH2D1B-53:1
5.2 lnc-FAM78B-1:1