Transcript: lnc-FAM84A-2:1

Basic information

LNCipedia transcript ID: lnc-FAM84A-2:1 
LNCipedia gene ID: lnc-FAM84A-2
Ensembl Gene ID: ENSG00000227718
Ensembl Transcript ID: ENST00000420828
Location (hg38): chr2:13723048-13758152
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 832 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002687; ENST00000420828; ENST00000420828.1; AC016730.1-001; OTTHUMT00000323608.1; NONHSAT069259
Alternative gene names: XLOC_001359; linc-FAM84A-2; ENSG00000227718; AC016730.1; ENSG00000227718.1; OTTHUMG00000151713.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.6371 non-coding 
CPAT coding probability 12.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM84A-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM84A-2:1
3.1 lnc-FAM84A-2:1
4.0 lnc-FAM84A-2:1
4.1 lnc-FAM84A-2:1
5.0 lnc-FAM84A-2:1
5.1 lnc-SNX17-153:2
5.2 lnc-FAM84A-2:1