Transcript: lnc-FAM92B-1:1

Basic information

LNCipedia transcript ID: lnc-FAM92B-1:1 
LNCipedia gene ID: lnc-FAM92B-1
Location (hg38): chr16:85286308-85303396
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1509 bp
Exons: 6
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4
Alternative transcript names: ENST00000505771; TCONS_00024305; NONHSAT144118
Alternative gene names: ENSG00000251607; XLOC_012033; linc-FAM92B-4; AC092275.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.6161 non-coding 
CPAT coding probability 7.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM92B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM92B-1:1
3.1 lnc-FAM92B-1:1
4.0 lnc-FAM92B-1:1
4.1 lnc-FAM92B-1:1
5.0 lnc-FAM92B-1:1
5.1 lnc-MTHFSD-25:1
5.2 lnc-FAM92B-1:1