Transcript: lnc-FAM98B-2:1

Basic information

LNCipedia transcript ID: lnc-FAM98B-2:1 
LNCipedia gene ID: lnc-FAM98B-2
Ensembl Gene ID: ENSG00000259598
Ensembl Transcript ID: ENST00000559544
Location (hg38): chr15:38524070-38534655
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 553 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559544.1; RP11-275I4.1-001; OTTHUMT00000418236.1; NONHSAT041715
Alternative gene names: ENSG00000259598.1; RP11-275I4.1; OTTHUMG00000172381.1; AC116158.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.786 non-coding 
CPAT coding probability 3.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAM98B-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAM98B-2:1
4.0 lnc-FAM98B-2:1
4.1 lnc-FAM98B-2:1
5.0 lnc-FAM98B-2:1
5.1 lnc-TMEM62-102:1
5.2 lnc-FAM98B-2:1