Transcript: lnc-FANCD2-1:6

Basic information

LNCipedia transcript ID: lnc-FANCD2-1:6 
LNCipedia gene ID: lnc-FANCD2-1
Location (hg38): chr3:10004268-10006990
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 683 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT087862
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.8609 non-coding 
CPAT coding probability 36.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FANCD2-1:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FANCD2-1:6
4.0 lnc-FANCD2-1:6
4.1 lnc-FANCD2-1:6
5.0 lnc-FANCD2-1:6
5.1 lnc-BRK1-3:7
5.2 lnc-FANCD2-1:6