Transcript: lnc-FANCF-3:1

Basic information

LNCipedia transcript ID: lnc-FANCF-3:1 
LNCipedia gene ID: lnc-FANCF-3
Ensembl Gene ID: ENSG00000254768
Ensembl Transcript ID: ENST00000528009
Location (hg38): chr11:22283730-22338245
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 635 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528009.1; CTD-2140G10.2-003; OTTHUMT00000387618.1; NONHSAT018383
Alternative gene names: ENSG00000254768.1; CTD-2140G10.2; OTTHUMG00000166053.1; ENSG00000254768.5; AC104009.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.6112 non-coding 
CPAT coding probability 42.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FANCF-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FANCF-3:1
4.0 lnc-FANCF-3:1
4.1 lnc-FANCF-3:1
5.0 lnc-FANCF-3:1
5.1 lnc-TPH1-31:1
5.2 lnc-FANCF-3:1