Transcript: lnc-FANCI-1:2

Basic information

LNCipedia transcript ID: lnc-FANCI-1:2 
LNCipedia gene ID: lnc-FANCI-1
Ensembl Gene ID: ENSG00000261441
Ensembl Transcript ID: ENST00000562356
Location (hg38): chr15:89335271-89336161
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 612 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562356.1; RP11-217B1.2-001; OTTHUMT00000421156.1; NONHSAT048280
Alternative gene names: ENSG00000261441.1; RP11-217B1.2; OTTHUMG00000172885.2; AC124068.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.3082 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FANCI-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FANCI-1:2
4.0 lnc-FANCI-1:2
4.1 lnc-FANCI-1:2
5.0 lnc-FANCI-1:2
5.1 lnc-MESP2-12:9
5.2 lnc-FANCI-1:2