Transcript: lnc-FANCM-1:6

Basic information

LNCipedia transcript ID: lnc-FANCM-1:6 
LNCipedia gene ID: lnc-FANCM-1
Ensembl Gene ID: ENSG00000257900
Ensembl Transcript ID: ENST00000546784
Location (hg38): chr14:45377268-45389286
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000546784; ENST00000546784.2; RP11-454K7.1-001; OTTHUMT00000410486.1; NONHSAT036656
Alternative gene names: ENSG00000257900; RP11-454K7.1; ENSG00000257900.2; OTTHUMG00000170809.1; AL162632.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 55.3985 non-coding 
CPAT coding probability 3.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FANCM-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FANCM-2:1
3.1 lnc-FANCM-3:1
4.0 lnc-FANCM-3:1
4.1 lnc-FANCM-1:6
5.0 lnc-FANCM-1:6
5.1 lnc-BRMS1L-111:6
5.2 lnc-FANCM-1:6