Transcript: lnc-FARS2-1:3

Basic information

LNCipedia transcript ID: lnc-FARS2-1:3 
LNCipedia gene ID: lnc-FARS2-1
Location (hg38): chr6:5851474-5870220
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 443 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233064.2|ENST00000454882.2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -212.2742 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FARS2-1:3 no no no no

Available literature

  1. Fang (2014), A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FARS2-1:3
5.0 lnc-FARS2-1:3
5.1 lnc-PRPF4B-69:1
5.2 lnc-FARS2-1:3