Transcript: lnc-FAS-1:1

Basic information

LNCipedia transcript ID: lnc-FAS-1:1 
LNCipedia gene ID: lnc-FAS-1
Ensembl Gene ID: ENSG00000261438
Ensembl Transcript ID: ENST00000562983
Location (hg38): chr10:89015836-89017059
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1224 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562983.1; RP11-399O19.8-001; OTTHUMT00000431776.1; NONHSAT015494
Alternative gene names: ENSG00000261438.1; RP11-399O19.8; OTTHUMG00000176337.1; RP11-399O19.9; AL157394.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.3186 non-coding 
CPAT coding probability 7.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FAS-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FAS-1:1
4.0 lnc-FAS-1:1
4.1 lnc-FAS-1:1
5.0 lnc-FAS-1:1
5.1 lnc-SMC3-287:1
5.2 lnc-FAS-1:1