Transcript: lnc-FBN1-3:3

Basic information

LNCipedia transcript ID: lnc-FBN1-3:3 
LNCipedia gene ID: lnc-FBN1-3
Ensembl Gene ID: ENSG00000259488
Ensembl Transcript ID: ENST00000559134
Location (hg38): chr15:48330346-48331792
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 577 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000559134.1; RP11-154J22.1-001; OTTHUMT00000417138.1; NONHSAT042342
Alternative gene names: ENSG00000259488.1; RP11-154J22.1; OTTHUMG00000172154.2; ENSG00000259488.2; AC023355.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.9678 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBN1-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FBN1-3:3
4.0 lnc-FBN1-3:3
4.1 lnc-FBN1-3:3
5.0 lnc-FBN1-3:3
5.1 lnc-SERINC4-57:9
5.2 lnc-FBN1-3:3