Transcript: lnc-FBXL20-1:3

Basic information

LNCipedia transcript ID: lnc-FBXL20-1:3 
LNCipedia gene ID: lnc-FBXL20-1
Location (hg38): chr17:39252644-39254297
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1654 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT053437; ENST00000585086.2
Alternative gene names: ENSG00000266753.2; RP11-690G19.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.8104 non-coding 
CPAT coding probability 3.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBXL20-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STAC2-1:2
4.0 lnc-FBXL20-1:3
4.1 lnc-FBXL20-1:3
5.0 lnc-FBXL20-1:3
5.1 lnc-SRCIN1-34:2
5.2 lnc-FBXL20-1:3