Transcript: lnc-FBXL5-2:1

Basic information

LNCipedia transcript ID: lnc-FBXL5-2:1 
LNCipedia gene ID: lnc-FBXL5-2
Ensembl Gene ID: ENSG00000249252
Ensembl Transcript ID: ENST00000502344
RefSeq ID: NR_125911
Location (hg38): chr4:15004942-15427914
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 630 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000502344.1; RP11-665G4.1-001; OTTHUMT00000359351.2; NONHSAT095614; NR_125911; ENST00000502344.5; NR_125911.1
Alternative gene names: ENSG00000249252.1; RP11-665G4.1; OTTHUMG00000160132.3; ENSG00000249252.5; AC098829.1; LOC101929095


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.3509 non-coding 
CPAT coding probability 13.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBXL5-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FBXL5-2:1
4.0 lnc-FBXL5-2:1
4.1 lnc-FBXL5-2:1
5.0 lnc-FBXL5-2:1
5.1 lnc-AFAP1-65:1
5.2 lnc-FBXL5-2:1