Transcript: lnc-FBXO17-5:4

Basic information

LNCipedia transcript ID: lnc-FBXO17-5:4 
LNCipedia gene ID: lnc-FBXO17-5
Ensembl Gene ID: ENSG00000269486
Ensembl Transcript ID: ENST00000599320
Location (hg38): chr19:38935297-38938632
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3336 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000599320.2
Alternative gene names: ENSG00000269486.2; CTC-360G5.9; AC011455.2; ERVK9-11


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 39.015 non-coding 
CPAT coding probability 22.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBXO17-5:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-SIRT2-5:2
4.1 lnc-SIRT2-5:2
5.0 lnc-SIRT2-5:2
5.1 lnc-FBXO17-5:2
5.2 lnc-FBXO17-5:4