Transcript: lnc-FBXO28-1:1

Basic information

LNCipedia transcript ID: lnc-FBXO28-1:1 
LNCipedia gene ID: lnc-FBXO28-1
Location (hg38): chr1:223995957-224009703
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 758 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000449219.1; RP11-504P24.4-001; OTTHUMT00000091227.1; NONHSAT009762
Alternative gene names: ENSG00000185495.6; RP11-504P24.4; OTTHUMG00000037473.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.6658 non-coding 
CPAT coding probability 2.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBXO28-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FBXO28-1:1
4.0 lnc-FBXO28-1:1
4.1 lnc-FBXO28-1:1
5.0 lnc-FBXO28-1:1
5.1 lnc-CAPN2-6:11
5.2 lnc-FBXO28-1:1