Transcript: lnc-FBXO8-1:1

Basic information

LNCipedia transcript ID: lnc-FBXO8-1:1 
LNCipedia gene ID: lnc-FBXO8-1
Ensembl Gene ID: ENSG00000251213
Ensembl Transcript ID: ENST00000504167
Location (hg38): chr4:174164441-174168913
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 335 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007904; ENST00000504167; ENST00000504167.1; RP11-248N22.2-001; OTTHUMT00000362075.1; NONHSAT099314
Alternative gene names: XLOC_004171; linc-MORF4-5; ENSG00000251213; RP11-248N22.2; ENSG00000251213.1; OTTHUMG00000160741.1; AC012055.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -608.2843 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBXO8-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FBXO8-1:1
3.1 lnc-FBXO8-1:1
4.0 lnc-FBXO8-1:1
4.1 lnc-FBXO8-1:1
5.0 lnc-FBXO8-1:1
5.1 lnc-HPGD-8:2
5.2 lnc-FBXO8-1:1