Transcript: lnc-FBXO8-5:1

Basic information

LNCipedia transcript ID: lnc-FBXO8-5:1 
LNCipedia gene ID: lnc-FBXO8-5
Ensembl Gene ID: ENSG00000251216
Ensembl Transcript ID: ENST00000503325
Location (hg38): chr4:173982619-173990861
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 314 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007901; ENST00000503325; ENST00000503325.1; RP11-161D15.3-002; OTTHUMT00000362025.1; NONHSAT099309
Alternative gene names: XLOC_004169; linc-MORF4-1; ENSG00000251216; RP11-161D15.3; ENSG00000251216.1; OTTHUMG00000160738.1; AC106895.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.5194 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBXO8-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FBXO8-5:1
3.1 lnc-FBXO8-5:1
4.0 lnc-FBXO8-5:1
4.1 lnc-FBXO8-5:1
5.0 lnc-FBXO8-5:1
5.1 lnc-HPGD-13:1
5.2 lnc-FBXO8-5:1