Transcript: lnc-FBXO8-6:2

Basic information

LNCipedia transcript ID: lnc-FBXO8-6:2 
LNCipedia gene ID: lnc-FBXO8-6
Ensembl Gene ID: ENSG00000250043
Ensembl Transcript ID: ENST00000502956
Location (hg38): chr4:173896394-173911895
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 777 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007900; ENST00000502956; ENST00000502956.1; RP11-161D15.2-001; OTTHUMT00000362023.1; NONHSAT099303
Alternative gene names: XLOC_004168; linc-MORF4-2; ENSG00000250043; RP11-161D15.2; ENSG00000250043.1; OTTHUMG00000160737.2; AC106895.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -228.3835 non-coding 
CPAT coding probability 10.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBXO8-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FBXO8-6:2
3.1 lnc-FBXO8-6:2
4.0 lnc-FBXO8-6:2
4.1 lnc-FBXO8-6:2
5.0 lnc-FBXO8-6:2
5.1 lnc-HPGD-14:2
5.2 lnc-FBXO8-6:2