Transcript: lnc-FBXW4-1:3

Basic information

LNCipedia transcript ID: lnc-FBXW4-1:3 
LNCipedia gene ID: lnc-FBXW4-1
Ensembl Gene ID: ENSG00000224817
Ensembl Transcript ID: ENST00000458489
Location (hg38): chr10:101704652-101708401
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 291 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00018034; ENST00000458489; ENST00000458489.1; RP11-190J1.3-001; OTTHUMT00000050002.1; NONHSAT016069
Alternative gene names: XLOC_008926; linc-FBXW4-2; ENSG00000224817; RP11-190J1.3; ENSG00000224817.1; OTTHUMG00000018941.1; AC010789.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.9917 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FBXW4-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FBXW4-2:1
3.1 lnc-FBXW4-2:1
4.0 lnc-FBXW4-1:3
4.1 lnc-FBXW4-1:3
5.0 lnc-FBXW4-1:3
5.1 lnc-CPN1-63:2
5.2 lnc-FBXW4-1:3