Transcript: lnc-FCGR3A-3:2

Basic information

LNCipedia transcript ID: lnc-FCGR3A-3:2 
LNCipedia gene ID: lnc-FCGR3A-3
Ensembl Gene ID: ENSG00000224515
Ensembl Transcript ID: ENST00000419446
Location (hg38): chr1:161556290-161557078
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 462 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000652; ENST00000419446.1; RP11-5K23.5-001; OTTHUMT00000102153.1; NONHSAT007186
Alternative gene names: XLOC_001067; linc-FCGR3A; ENSG00000224515.1; RP11-5K23.5; OTTHUMG00000043773.1; AL590385.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.4766 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FCGR3A-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FCGR3B-2:1
3.1 lnc-FCGR3B-3:1
4.0 lnc-FCGR3B-3:1
4.1 lnc-FCGR3B-3:1
5.0 lnc-FCGR3B-3:1
5.1 lnc-SH2D1B-18:1
5.2 lnc-FCGR3A-3:2