Transcript: lnc-FCN1-3:1

Basic information

LNCipedia transcript ID: lnc-FCN1-3:1 
LNCipedia gene ID: lnc-FCN1-3
Location (hg38): chr9:134527182-134545244
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 428 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015892; ENST00000435284; ENST00000435284.1; RP11-473E2.4-001; OTTHUMT00000054947.1; NONHSAT135397
Alternative gene names: XLOC_007886; linc-BRD3-2; ENSG00000228877; RP11-473E2.4; ENSG00000228877.1; OTTHUMG00000020886.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -167.3333 non-coding 
CPAT coding probability 12.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FCN1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf104-1:1
3.1 lnc-C9orf104-1:1
4.0 lnc-C9orf104-1:1
4.1 lnc-C9orf104-1:1
5.0 lnc-C9orf104-1:1
5.1 lnc-SURF1-27:1
5.2 lnc-FCN1-3:1