Transcript: lnc-FCN1-5:1

Basic information

LNCipedia transcript ID: lnc-FCN1-5:1 
LNCipedia gene ID: lnc-FCN1-5
Location (hg38): chr9:134505472-134521442
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 450 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015891; ENST00000444936; ENST00000444936.1; RP11-473E2.2-001; OTTHUMT00000054945.1; NONHSAT135395
Alternative gene names: XLOC_007885; linc-BRD3-3; ENSG00000223795; RP11-473E2.2; ENSG00000223795.1; OTTHUMG00000020884.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.2758 non-coding 
CPAT coding probability 3.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FCN1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf104-2:1
3.1 lnc-C9orf104-2:1
4.0 lnc-C9orf104-2:1
4.1 lnc-C9orf104-2:1
5.0 lnc-C9orf104-2:1
5.1 lnc-SURF1-26:1
5.2 lnc-FCN1-5:1