Transcript: lnc-FDX1-1:4

Basic information

LNCipedia transcript ID: lnc-FDX1-1:4 
LNCipedia gene ID: lnc-FDX1-1
Ensembl Gene ID: ENSG00000254416
Ensembl Transcript ID: ENST00000526703
Location (hg38): chr11:110355199-110381986
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 555 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526703; ENST00000526703.1; RP11-347E10.1-002; OTTHUMT00000390589.1; NONHSAT024077
Alternative gene names: ENSG00000254416; RP11-347E10.1; ENSG00000254416.1; OTTHUMG00000166588.1; ENSG00000254416.5; AP000924.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.3307 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FDX1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FDX1-1:4
3.1 lnc-FDX1-1:4
4.0 lnc-FDX1-1:4
4.1 lnc-FDX1-1:4
5.0 lnc-FDX1-1:4
5.1 lnc-FDX1-1:4
5.2 lnc-FDX1-1:4