Transcript: lnc-FGF3-1:1

Basic information

LNCipedia transcript ID: lnc-FGF3-1:1 
LNCipedia gene ID: lnc-FGF3-1
Ensembl Gene ID: ENSG00000254605
Ensembl Transcript ID: ENST00000528507
Location (hg38): chr11:70014858-70021059
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 655 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528507; ENST00000528507.1; RP11-626H12.2-001; OTTHUMT00000393502.1; NONHSAT022622
Alternative gene names: ENSG00000254605; RP11-626H12.2; ENSG00000254605.1; OTTHUMG00000167160.1; AP003555.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.2972 non-coding 
CPAT coding probability 5.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FGF3-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGF3-1:1
3.1 lnc-FGF3-1:1
4.0 lnc-FGF3-1:1
4.1 lnc-FGF3-1:1
5.0 lnc-FGF3-1:1
5.1 lnc-KMT5B-30:1
5.2 lnc-FGF3-1:1