Transcript: lnc-FGF3-2:3

Basic information

LNCipedia transcript ID: lnc-FGF3-2:3 
LNCipedia gene ID: lnc-FGF3-2
Ensembl Gene ID: ENSG00000248844
Ensembl Transcript ID: ENST00000528316
RefSeq ID: NR_120530
Location (hg38): chr11:70056230-70063924
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000528316; ENST00000528316.1; RP11-626H12.3-002; OTTHUMT00000393504.1; NONHSAT022625; NR_120530; ENST00000528316.5; NR_120530.1
Alternative gene names: ENSG00000248844; RP11-626H12.3; ENSG00000248844.2; OTTHUMG00000167161.1; ENSG00000248844.6; AP003555.1; LOC101928443


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.8229 non-coding 
CPAT coding probability 1.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FGF3-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGF3-2:3
3.1 lnc-FGF3-2:3
4.0 lnc-FGF3-2:3
4.1 lnc-FGF3-2:3
5.0 lnc-FGF3-2:3
5.1 lnc-KMT5B-32:3
5.2 lnc-FGF3-2:3