Transcript: lnc-FGFR1-2:1

Basic information

LNCipedia transcript ID: lnc-FGFR1-2:1 
LNCipedia gene ID: lnc-FGFR1-2
Ensembl Gene ID: ENSG00000272159
Ensembl Transcript ID: ENST00000606593
Location (hg38): chr8:38408048-38408742
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 695 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606593.1
Alternative gene names: ENSG00000272159.1; RP11-350N15.6; AC087623.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -292.4571 non-coding 
CPAT coding probability 2.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FGFR1-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGFR1-2:1
4.0 lnc-FGFR1-2:1
4.1 lnc-FGFR1-2:1
5.0 lnc-FGFR1-2:1
5.1 lnc-C8orf86-2:2
5.2 lnc-FGFR1-2:1