Transcript: lnc-FGFR1OP-18:2

Basic information

LNCipedia transcript ID: lnc-FGFR1OP-18:2 
LNCipedia gene ID: lnc-FGFR1OP-18
RefSeq ID: NR_040022
Location (hg38): chr6:166342631-166351469
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3908 bp
Exons: 2
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT116043; NR_040022; NR_040022.1
Alternative gene names: LOC100289495


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 37.4052 non-coding 
CPAT coding probability 42.71% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FGFR1OP-18:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGFR1OP-3:3
4.0 lnc-FGFR1OP-18:2
4.1 lnc-FGFR1OP-18:2
5.0 lnc-FGFR1OP-18:2
5.1 lnc-SYTL3-69:2
5.2 lnc-FGFR1OP-18:2