Transcript: lnc-FGFR2-12:1

Basic information

LNCipedia transcript ID: lnc-FGFR2-12:1 
HGNC Gene Symbol: lnc-FGFR2-12    
HGNC Full Gene Name: WDR11 antisense RNA 1
Ensembl Gene ID: ENSG00000227165
Ensembl Transcript ID: ENST00000630905
Location (hg38): chr10:120763296-120851345
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 769 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000630905.2
Alternative gene names: ENSG00000227165.7; WDR11-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -61.0333 non-coding 
CPAT coding probability 8.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FGFR2-12:1 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 WDR11-AS1:1
4.1 WDR11-AS1:1
5.0 WDR11-AS1:1
5.1 lnc-NSMCE4A-92:1
5.2 lnc-FGFR2-12:1