Transcript: lnc-FGFR2-12:6

Basic information

LNCipedia transcript ID: lnc-FGFR2-12:6 
HGNC Gene Symbol: lnc-FGFR2-12    
HGNC Full Gene Name: WDR11 antisense RNA 1
Ensembl Gene ID: ENSG00000227165
Ensembl Transcript ID: ENST00000628194
RefSeq ID: NR_033850
Location (hg38): chr10:120761812-120851179
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2500 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT016672; NR_033850; ENST00000628194.2; NR_033850.1
Alternative gene names: ENSG00000227165.7; WDR11-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.127 non-coding 
CPAT coding probability 4.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FGFR2-12:6 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGFR2-4:4
4.0 WDR11-AS1:3
4.1 WDR11-AS1:3
5.0 WDR11-AS1:3
5.1 lnc-NSMCE4A-92:6
5.2 lnc-FGFR2-12:6