Transcript: lnc-FGFR2-1:1

Basic information

LNCipedia transcript ID: lnc-FGFR2-1:1 
LNCipedia gene ID: lnc-FGFR2-1
Ensembl Gene ID: ENSG00000223432
Ensembl Transcript ID: ENST00000434988
Location (hg38): chr10:121615425-121615839
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 310 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00018061; ENST00000434988; ENST00000434988.1; RP11-62L18.3-001; OTTHUMT00000050714.1; NONHSAT016705
Alternative gene names: XLOC_008972; linc-FGFR2; ENSG00000223432; RP11-62L18.3; ENSG00000223432.1; OTTHUMG00000019174.1; AC009988.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.1793 non-coding 
CPAT coding probability 6.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FGFR2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGFR2-1:1
3.1 lnc-FGFR2-1:1
4.0 lnc-FGFR2-1:1
4.1 lnc-FGFR2-1:1
5.0 lnc-FGFR2-1:1
5.1 lnc-NSMCE4A-12:1
5.2 lnc-FGFR2-1:1