Transcript: lnc-FGFRL1-9:1

Basic information

LNCipedia transcript ID: lnc-FGFRL1-9:1 
LNCipedia gene ID: lnc-FGFRL1-9
Ensembl Gene ID: ENSG00000227189
Ensembl Transcript ID: ENST00000417557
Location (hg38): chr4:1151372-1153701
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2165 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007377; ENST00000417557.1; AC092535.3-001; OTTHUMT00000239196.1; NONHSAT094669
Alternative gene names: XLOC_003419; linc-MAEA-2; ENSG00000227189.2; AC092535.3; OTTHUMG00000118999.1; AC092535.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 78.9243 coding 
CPAT coding probability 68.58% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FGFRL1-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C4orf42-2:1
3.1 lnc-C4orf42-3:1
4.0 lnc-C4orf42-3:1
4.1 lnc-C4orf42-3:1
5.0 lnc-C4orf42-3:1
5.1 lnc-GPR78-117:1
5.2 lnc-FGFRL1-9:1