Transcript: lnc-FIGNL2-6:2

Basic information

LNCipedia transcript ID: lnc-FIGNL2-6:2 
LNCipedia gene ID: lnc-FIGNL2-6
Ensembl Gene ID: ENSG00000260122
Ensembl Transcript ID: ENST00000565518
Location (hg38): chr12:51809705-51810600
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 896 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565518.1; RP11-923I11.3-001; OTTHUMT00000421206.1; NONHSAT028286
Alternative gene names: ENSG00000260122.1; RP11-923I11.3; OTTHUMG00000172897.1; AC068987.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.3726 non-coding 
CPAT coding probability 5.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FIGNL2-6:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRT80-6:1
4.0 lnc-KRT80-6:1
4.1 lnc-KRT80-6:1
5.0 lnc-KRT80-6:1
5.1 lnc-FIGNL2-6:1
5.2 lnc-FIGNL2-6:2