Transcript: lnc-FITM2-1:2

Basic information

LNCipedia transcript ID: lnc-FITM2-1:2 
LNCipedia gene ID: lnc-FITM2-1
Location (hg38): chr20:44350722-44352102
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 370 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000430481.1; RP5-881L22.5-002; OTTHUMT00000079347.1; NONHSAT079863
Alternative gene names: ENSG00000226812.1; RP5-881L22.5; OTTHUMG00000032526.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -303.3541 non-coding 
CPAT coding probability 3.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FITM2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FITM2-1:2
4.0 lnc-FITM2-1:2
4.1 lnc-FITM2-1:2
5.0 lnc-FITM2-1:2
5.1 lnc-MATN4-32:3
5.2 lnc-FITM2-1:2