Transcript: lnc-FITM2-1:4

Basic information

LNCipedia transcript ID: lnc-FITM2-1:4 
LNCipedia gene ID: lnc-FITM2-1
Ensembl Gene ID: ENSG00000226812
Ensembl Transcript ID: ENST00000430481
Location (hg38): chr20:44350707-44352102
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 385 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430481.2
Alternative gene names: ENSG00000226812.2; RP5-881L22.5; AL117382.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -303.3541 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FITM2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FITM2-1:4
4.0 lnc-FITM2-1:4
4.1 lnc-FITM2-1:4
5.0 lnc-FITM2-1:4
5.1 lnc-MATN4-32:4
5.2 lnc-FITM2-1:4