Transcript: lnc-FKBP2-1:1

Basic information

LNCipedia transcript ID: lnc-FKBP2-1:1 
LNCipedia gene ID: lnc-FKBP2-1
Ensembl Gene ID: ENSG00000256940
Ensembl Transcript ID: ENST00000544553
Location (hg38): chr11:64245964-64248217
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 391 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000544553.1; RP11-783K16.5-001; OTTHUMT00000396402.1; NONHSAT021973
Alternative gene names: ENSG00000256940.1; RP11-783K16.5; OTTHUMG00000167815.1; AP001453.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.9512 non-coding 
CPAT coding probability 7.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FKBP2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FKBP2-1:1
4.0 lnc-FKBP2-1:1
4.1 lnc-FKBP2-1:1
5.0 lnc-FKBP2-1:1
5.1 lnc-PPP2R5B-49:8
5.2 lnc-FKBP2-1:1