Transcript: lnc-FOXA2-7:1

Basic information

LNCipedia transcript ID: lnc-FOXA2-7:1 
LNCipedia gene ID: lnc-FOXA2-7
Ensembl Gene ID: ENSG00000204684
Ensembl Transcript ID: ENST00000377121
RefSeq ID: NR_027089
Location (hg38): chr20:22400351-22420643
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1666 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00027845; ENST00000377121; ENST00000377121.1; RP5-1004I9.1-001; OTTHUMT00000078288.2; NONHSAT078976; NR_027089; NR_027089.2
Alternative gene names: XLOC_013680; linc-NKX2-2-2; ENSG00000204684; RP5-1004I9.1; ENSG00000204684.2; OTTHUMG00000032040.2; ENSG00000204684.3; AL133464.1; LOC284788


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.9998 non-coding 
CPAT coding probability 6.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXA2-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXA2-7:1
3.1 lnc-FOXA2-7:1
4.0 lnc-FOXA2-7:1
4.1 lnc-FOXA2-7:1
5.0 lnc-FOXA2-7:1
5.1 lnc-CST4-37:7
5.2 lnc-FOXA2-7:1