Transcript: lnc-FOXA2-7:3

Basic information

LNCipedia transcript ID: lnc-FOXA2-7:3 
LNCipedia gene ID: lnc-FOXA2-7
Location (hg38): chr20:22400297-22413656
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1415 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028329; NONHSAT078974
Alternative gene names: XLOC_013680; linc-NKX2-2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.1851 non-coding 
CPAT coding probability 6.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXA2-7:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXA2-7:3
3.1 lnc-FOXA2-7:3
4.0 lnc-FOXA2-7:3
4.1 lnc-FOXA2-7:3
5.0 lnc-FOXA2-7:3
5.1 lnc-CST4-37:11
5.2 lnc-FOXA2-7:3