Transcript: lnc-FOXA2-7:6

Basic information

LNCipedia transcript ID: lnc-FOXA2-7:6 
LNCipedia gene ID: lnc-FOXA2-7
Location (hg38): chr20:22468705-22471559
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 268 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028331; NONHSAT078981
Alternative gene names: XLOC_013682; linc-NKX2-2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -255.0854 non-coding 
CPAT coding probability 7.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXA2-7:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXA2-5:1
3.1 lnc-FOXA2-5:1
4.0 lnc-FOXA2-7:6
4.1 lnc-FOXA2-7:6
5.0 lnc-FOXA2-7:6
5.1 lnc-CST4-37:1
5.2 lnc-FOXA2-7:6