Transcript: lnc-FOXA2-7:8

Basic information

LNCipedia transcript ID: lnc-FOXA2-7:8 
LNCipedia gene ID: lnc-FOXA2-7
Location (hg38): chr20:22458602-22468720
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1094 bp
Exons: 3
Sources: Nielsen et al.,2014
Alternative transcript names: l_2086_chr20:22439239-22449253_liver
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.4475 non-coding 
CPAT coding probability 29.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXA2-7:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXA2-5:2
4.0 lnc-FOXA2-7:8
4.1 lnc-FOXA2-7:8
5.0 lnc-FOXA2-7:8
5.1 lnc-CST4-37:3
5.2 lnc-FOXA2-7:8