Transcript: lnc-FOXB1-5:1

Basic information

LNCipedia transcript ID: lnc-FOXB1-5:1 
LNCipedia gene ID: lnc-FOXB1-5
Ensembl Gene ID: ENSG00000259591
Ensembl Transcript ID: ENST00000558630
Location (hg38): chr15:60763906-60765035
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 470 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558630.1; RP11-554D20.1-001; OTTHUMT00000416856.1; NONHSAT044235
Alternative gene names: ENSG00000259591.1; RP11-554D20.1; OTTHUMG00000172107.1; AC022898.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.8743 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXB1-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXB1-5:1
4.0 lnc-FOXB1-5:1
4.1 lnc-FOXB1-5:1
5.0 lnc-FOXB1-5:1
5.1 lnc-MAP2K1-79:1
5.2 lnc-FOXB1-5:1