Transcript: lnc-FOXD1-4:3

Basic information

LNCipedia transcript ID: lnc-FOXD1-4:3 
LNCipedia gene ID: lnc-FOXD1-4
Ensembl Gene ID: ENSG00000251599
Ensembl Transcript ID: ENST00000508255
RefSeq ID: NR_134252
Location (hg38): chr5:73132008-73150592
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 449 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000508255.1; RP11-232L2.2-001; OTTHUMT00000369166.1; NONHSAT102101; NR_134252.1
Alternative gene names: ENSG00000251599.1; RP11-232L2.2; OTTHUMG00000162500.1; AC116345.3; LOC105379030


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXD1-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRA2-4:1
4.0 lnc-ANKRA2-4:1
4.1 lnc-ANKRA2-4:1
5.0 lnc-ANKRA2-4:1
5.1 lnc-ANKRD34B-144:3
5.2 lnc-FOXD1-4:3