Transcript: lnc-FOXD2-10:2

Basic information

LNCipedia transcript ID: lnc-FOXD2-10:2 
LNCipedia gene ID: lnc-FOXD2-10
Location (hg38): chr1:47437754-47442533
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 2475 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227947.1|ENCT00000005588.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -83.0765 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXD2-10:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-FOXD2-10:2
5.0 lnc-FOXD2-10:2
5.1 lnc-CMPK1-10:2
5.2 lnc-FOXD2-10:2