Transcript: lnc-FOXD4L5-35:5

Basic information

LNCipedia transcript ID: lnc-FOXD4L5-35:5 
LNCipedia gene ID: lnc-FOXD4L5-35
Ensembl Gene ID: ENSG00000204802
Ensembl Transcript ID: ENST00000377518
Location (hg38): chr9:62374128-62376783
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2541 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000377518; ENST00000377518.3; RP11-111F5.4-001; OTTHUMT00000037088.1; NONHSAT131462
Alternative gene names: ENSG00000204802; RP11-111F5.4; ENSG00000204802.3; OTTHUMG00000013301.1; AL590399.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 86.6447 coding 
CPAT coding probability 12.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FOXD4L5-35:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM27E1.1-5:2
3.1 lnc-FAM27E1.1-5:2
4.0 lnc-FAM27E1.1-5:2
4.1 lnc-FAM27E1.1-5:2
5.0 lnc-FAM27E1.1-5:2
5.1 lnc-ZFAND5-89:5
5.2 lnc-FOXD4L5-35:5