Transcript: lnc-FOXD4L5-35:6

Basic information

LNCipedia transcript ID: lnc-FOXD4L5-35:6 
LNCipedia gene ID: lnc-FOXD4L5-35
Ensembl Gene ID: ENSG00000204802
Ensembl Transcript ID: ENST00000429818
Location (hg38): chr9:62374462-62376780
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1480 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429818; ENST00000429818.1; RP11-111F5.4-002; OTTHUMT00000037089.1; NONHSAT131463
Alternative gene names: ENSG00000204802; RP11-111F5.4; ENSG00000204802.3; OTTHUMG00000013301.1; AL590399.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 74.7471 coding 
CPAT coding probability 19.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-FOXD4L5-35:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM27E1.1-5:3
3.1 lnc-FAM27E1.1-5:3
4.0 lnc-FAM27E1.1-5:3
4.1 lnc-FAM27E1.1-5:3
5.0 lnc-FAM27E1.1-5:3
5.1 lnc-ZFAND5-89:6
5.2 lnc-FOXD4L5-35:6