Transcript: lnc-FOXD4L5-44:5

Basic information

LNCipedia transcript ID: lnc-FOXD4L5-44:5 
LNCipedia gene ID: lnc-FOXD4L5-44
Location (hg38): chr9:60954544-60956486
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1126 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00015809; ENST00000433614; ENST00000433614.1; RP11-95H8.5-001; OTTHUMT00000143679.1; NONHSAT131228
Alternative gene names: XLOC_007688; linc-CNTNAP3-3; ENSG00000228534; RP11-95H8.5; ENSG00000228534.1; OTTHUMG00000067142.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.3178 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXD4L5-44:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CNTNAP3-3:1
3.1 lnc-CNTNAP3-3:1
4.0 lnc-CNTNAP3-3:1
4.1 lnc-CNTNAP3-3:1
5.0 lnc-CNTNAP3-3:1
5.1 lnc-ZFAND5-100:5
5.2 lnc-FOXD4L5-44:5