Transcript: lnc-FOXD4L6-3:1

Basic information

LNCipedia transcript ID: lnc-FOXD4L6-3:1 
LNCipedia gene ID: lnc-FOXD4L6-3
Location (hg38): chr9:41009307-41035564
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2033 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000412376; ENST00000412376.1; RP11-87H9.3-001; OTTHUMT00000143173.1; NONHSAT131647
Alternative gene names: ENSG00000231242; RP11-87H9.3; ENSG00000231242.1; OTTHUMG00000066821.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.2329 non-coding 
CPAT coding probability 3.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXD4L6-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXD4L6-3:1
3.1 lnc-FOXD4L6-3:1
4.0 lnc-FOXD4L6-3:1
4.1 lnc-FOXD4L6-3:1
5.0 lnc-FOXD4L6-3:1
5.1 lnc-SHB-36:2
5.2 lnc-FOXD4L6-3:1