Transcript: lnc-FOXG1-22:1

Basic information

LNCipedia transcript ID: lnc-FOXG1-22:1 
LNCipedia gene ID: lnc-FOXG1-22
Ensembl Gene ID: ENSG00000258081
Ensembl Transcript ID: ENST00000550024
Location (hg38): chr14:26836728-26933772
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550024; ENST00000550024.1; RP11-384J4.2-001; OTTHUMT00000409119.1; NONHSAT036125
Alternative gene names: ENSG00000258081; RP11-384J4.2; ENSG00000258081.2; OTTHUMG00000170435.2; ENSG00000258081.3; AL110292.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.0027 non-coding 
CPAT coding probability 6.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXG1-22:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXG1-4:1
3.1 lnc-FOXG1-4:1
4.0 lnc-FOXG1-4:1
4.1 lnc-FOXG1-4:1
5.0 lnc-FOXG1-4:1
5.1 lnc-G2E3-29:1
5.2 lnc-FOXG1-22:1