Transcript: lnc-FOXJ3-1:2

Basic information

LNCipedia transcript ID: lnc-FOXJ3-1:2 
LNCipedia gene ID: lnc-FOXJ3-1
Ensembl Gene ID: ENSG00000227527
Ensembl Transcript ID: ENST00000436207
Location (hg38): chr1:42335386-42338376
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 661 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT002733; ENST00000436207.2
Alternative gene names: ENSG00000227527.2; RP11-223A3.1; AC096540.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.6859 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXJ3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXJ3-1:2
4.0 lnc-FOXJ3-1:2
4.1 lnc-FOXJ3-1:2
5.0 lnc-FOXJ3-1:2
5.1 lnc-FOXJ3-1:2
5.2 lnc-FOXJ3-1:2