Transcript: lnc-FOXL1-1:1

Basic information

LNCipedia transcript ID: lnc-FOXL1-1:1 
LNCipedia gene ID: lnc-FOXL1-1
Ensembl Gene ID: ENSG00000261161
Ensembl Transcript ID: ENST00000565822
Location (hg38): chr16:86646301-86668923
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 508 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000565822.1; RP11-58A18.1-001; OTTHUMT00000432203.1; NONHSAT144230
Alternative gene names: ENSG00000261161.1; RP11-58A18.1; OTTHUMG00000176483.1; AC009154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.7716 non-coding 
CPAT coding probability 0.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-FOXL1-1:1 no no no no

Available literature

  1. Al-Tassan (2015), A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FOXL1-1:1
4.0 lnc-FOXL1-1:1
4.1 lnc-FOXL1-1:1
5.0 lnc-FOXL1-1:1
5.1 lnc-FOXL1-1:1
5.2 lnc-FOXL1-1:1